Showing posts with label complexity. Show all posts
Showing posts with label complexity. Show all posts

7/29/2012

Dynamic Models in Biology Review

Dynamic Models in Biology
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This is an excellent book for students or faculty interested in learning more about the current state of the art in modeling of biological systems. The authors make a great effort to keep the mathematical sophistication at a level that students (or faculty) who primarily have a biological background will still be able to follow in some detail. They are also able to suggest some of the exciting current areas of research and new areas for the future. All in all, well worth reading if you are interested in the topic of modeling of biological systems.

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7/11/2012

Complex Adaptive Systems: An Introduction to Computational Models of Social Life (Princeton Studies in Complexity) Review

Complex Adaptive Systems: An Introduction to Computational Models of Social Life (Princeton Studies in Complexity)
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At the time of writing this review, this book isn't searchable through Amazon, that's too bad because if you're reading the reviews wondering if it's worth buying, just browsing through any page from the intro or appendix B would clearly resolve any remnant hesitation. This book is a must have for anyone even remotely interested in complex adaptive systems. Scott Page and John Miller dress the landscape and state of the art of computational social science, the issues are motivated from the ground up and the existing approaches to resolve them explicitly detailed, yet using clear and jargon free language. For example, descriptions of the many concepts repeatedly used in the scientific method (of CAS et al) such as ergodicity or optimization theory are refreshing and insightful, simply stuff you don't get from textbooks, but rather that one would learn over years of experience doing.
In summary, the authors are handing us an expert summary of literature and developments of a complex field in a concise, fun and delightful read, it would be a shame to miss it.

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6/23/2012

Thinking in Complexity: The Computational Dynamics of Matter, Mind, and Mankind Review

Thinking in Complexity: The Computational Dynamics of Matter, Mind, and Mankind
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[A review of the 4th Edition, 2003.]
This book studies complexity and nonlinearity across a diverse range of applications. Much of the book revolves around organic evolution and the evolution of a sentient mind. And how complexity analysis might aid in the understanding of these fields. Not the least in devising deeper forms of artificial intelligence.
So intriguing techniques like cellular automata and neural networks are studied. There is a fair amount of speculation as to how these and other topics might ultimately relate to sentience or consciousness. But the musings are grounded in solid science. Like that of a Hopfield system or a Boltzmann machine. This 4th edition is a good reflection of the boundaries of our knowledge.

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4/08/2012

Artificial Life Models in Software Review

Artificial Life Models in Software
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Remember Conway's Game of Life? Surely you must, if you are interested in this book. The Game has been around since the 70s. The editors have cultivated recent research papers that demonstrate how far the field has advanced. Reinforced by some pretty colour plates that depict artificial entities [dare we call them living?] in some surroundings. These include the modelling of bee flights through a garden, and simulated trajectories of a group of bacteria.
Nor is the Game of Life ignored. One plate shows it in three dimensions. The Game is played in 2 dimensions, with time as the third dimension. An obvious choice that gives interesting trajectories of the cells.
The narrative adds to the illustrations. By describing a variety of computer simulations [worlds?]. Where the experimenter can tweak many parameters, and watch her world unfold. Some worlds are impressively rich in complexity of observed behaviours.
The only drawback in the book is its skimpy index. A mere two pages. It should have been more detailed.

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The advent of powerful processing technologies and the advances in software development tools have drastically changed the approach and implementation of computational research in fundamental properties of living systems through simulating and synthesizing biological entities and processes in artificial media. Nowadays realistic physical and physiological simulation of natural and would-be creatures, worlds and societies becomes a low-cost task for ordinary home computers. The progress in technology has dramatically reshaped the structure of the software, the execution of a code, and visualization fundamentals. This has led to the emergence of novel breeds of artificial life software models, including three-dimensional programmable simulation environment, distributed discrete events platforms and multi-agent systems. This second edition reflects the technological and research advancements, and presents the best examples of artificial life software models developed in the World and available for users.

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3/19/2012

Understanding Agent Systems (Springer Series on Agent Technology) Review

Understanding Agent Systems (Springer Series on Agent Technology)
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There are several books on intelligent agents and multi-agents systems that I've come across, but most are either too broad-ranging and shallow so that they don't actually get to important core issues, or they're too narrow and mathematical for my liking (and for many others). This excellent book somehow manages to pull off the feat of providing a good introduction to agents, while also drilling down to some fascinating and deep issues in multi-agent systems. What's particularly good is that it does two things - it analyses and explains the issues with really clear textual description, and then provides a more formal description (using the Z specification language) that is surprisingly readable.
After providing an introductory chapter, the book presents a "framework" for understanding agent systems (hence the title) in which it brings together various different notions of agents. The chapters cover the framework itself, the different kinds of inter-agent
relationships that arise within it (to get to multi-agent systems), and more complex agents with greater sophistication. There are also a couple of case-study chapters that show how the model can be used to give descriptions of BDI systems and the contract net.
Throughout, the authors provide really good explanations, and then also formal descriptions using Z. Whether or not you buy the claim that Z is the most used industrial formal method, it turns out that despite the mathematical nature of the Z specification, the book as a whole is really very readable. It is worth noting that the level of mathematical description in the book for describing the framework and the systems is pretty close to abstract code descriptions (which is perhaps not surprising given that Z is intended for use for specifying software). With the appendix intro to Z, the book should also be a useful resource for developers wanting to understand exactly what would be involved in building systems.
One of the difficulties I've found when reading about agents is trying to make sense of some very different ideas and systems, and trying to understand how they fit together. This book provides some of the answers. In summary, the book covers some basic agent concepts, and builds them up to describe quite complex multi-agent systems, moving from abstract ideas to descriptions of specific implemented systems, and showing how they come together. It provides an excellent
introduction to agents, and keeps going to address some much deeper issues.

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Mark d'Inverno and Michael Luck presenta formal approach to dealing with agents and agent systems in this second edition of Understanding Agent Systems. The Z specification language is used to establish an accessible and unified formal account of agent systems and inter-agent relationships. In particular, the framework provides precise and unambiguous meanings for common concepts and terms for agent systems, allows for the description of alternative agent models and architectures, and serves as a foundation for subsequent development of increasingly refined agent concepts. The practicability of this approach is verified by applying the formal framework to three detailed case studies. The book will appeal equally to researchers, students, and professionals in industry.

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3/14/2012

Modeling Complex Systems (Graduate Texts in Contemporary Physics) Review

Modeling Complex Systems (Graduate Texts in Contemporary Physics)
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This is a fine book to learn the state of the art in 2004 in the field of complex systems modeling. It has the right blend of useful illustrations from many types of applications and of clean mathematics, without overdoing it in terms of abstraction. It is expensive but I don't regret my purchase.

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This book explores the process of modeling complex systems in the widest sense of that term, drawing on examples from such diverse fields as ecology, epidemiology, sociology, seismology, as well as economics. It also provides the mathematical tools for studying the dynamics of these systems. Boccara takes a carefully inductive approach in defining what it means for a system to be "complex" (and at the same time addresses the equally elusive concept of emergent properties). This is the first text on the subject to draw comprehensive conclusions from such a wide range of analogous phenomena.

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2/07/2012

Simulating Society: A Mathematica Toolkit for Modeling Socioeconomic Behavior Review

Simulating Society: A Mathematica Toolkit for Modeling Socioeconomic Behavior
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This book will help you design simulations. It doesn't take you trough the design on the simulation, but rather help you apply certain algorithms to your simulations. If you know simulations and require help in coding Mathematica, this book is for you.

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An exploration of the basis for social and economic behaviour. Using cellular automata in particular, the authors model various factors that are involved in a system of individuals who interact socially and economically with one another. Computer simulations in the social sciences provide a laboratory in which qualitative ideas about social and economic interactions can be tested. This brings a new dimension to the science, where 'explanations' abound, but are rarely subject to much experimental testing. The authors have chosen Mathematica because it has a number of features which make it uniquely qualified for use by social scientists, especially those without expertise in computer programming. Further, users can easily access and readily interact with the various 3.0 Mathematica notebooks, plus other data to be found at www.telospub.com.

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1/13/2012

Scaling Analysis in Modeling Transport and Reaction Processes: A Systematic Approach to Model Building and the Art of Approximation Review

Scaling Analysis in Modeling Transport and Reaction Processes: A Systematic Approach to Model Building and the Art of Approximation
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This is a most recommended book to everyone dealing with engineering analysis. Nicely written, this is a good reading. Recomended for graduate students or advanced undergrad with strong interest on math, computer analysis.

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This book is unique as the first effort to expound on the subject of systematic scaling analysis. Not written for a specific discipline, the book targets any reader interested in transport phenomena and reaction processes. The book is logically divided into chapters on the use of systematic scaling analysis in fluid dynamics, heat transfer, mass transfer, and reaction processes. An integrating chapter is included that considers more complex problems involving combined transport phenomena. Each chapter includes several problems that are explained in considerable detail. These are followed by several worked examples for which the general outline for the scaling is given. Each chapter also includes many practice problems.
This book is based on recognizing the value of systematic scaling analysis as a pedagogical method for teaching transport and reaction processes and as a research tool for developing and solving models and in designing experiments. Thus, the book can serve as both a textbook and a reference book.

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12/10/2011

Analogy-Making as Perception: A Computer Model (Neural Network Modeling and Connectionism) Review

Analogy-Making as Perception: A Computer Model (Neural Network Modeling and Connectionism)
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Melanie Mitchell's analogy-making as perception is a remarkably original book. It documents an artificial intelligence project known as copycat, which was implemented as the author's PhD project under Douglas Hofstadter.
Copycat is unlike anything in artificial intelligence. It is not a symbolic system, neither a connectionist one. The major goal of the project is to study the nature of concepts. Concepts, as we all know, are flexible, context-sensitive creatures. For instance, DNA has nothing to do with a computer program, but there is a sense on which we can see DNA as a computer program that guides embrionary development. DNA can also be seen as a zipper, as it "zips down" in two parts (for cell reproduction). Still another view would be DNA as a will, for it carries valuable hereditary "property". Now, DNA is in truth just a molecule, and nothing else. The question is, how can we see the same thing (such as DNA) as so many different things? Moreover, how can these fluid context-sensitive concepts be implemented in rigid, rule-obeying computers?
To which the answer is: what we view is the abstract roles that DNA plays in embrionary development, cell division, and in individual reproduction. And this is the very idea of "Analogy-making as perception".
Well, not so fast. The copycat project is not designed to grasp such extremely complex subjects as DNA, but, on the other hand, it presents a computational architecture that suggests what the nature of concepts is like, and how flexible concepts may emerge from inflexible mechanisms.
Copycat can solve analogy problems such as abc->abd:ijk-> ?. But it is not restricted to trivial ones. Consider the following analogy: abc ->abd:xyz->?. How would you solve it? How do you think that copycat solves it?
Obviously, this project doesn't fit in very easily in classical artificial intelligence, as it attacks some of the most pervasive ideas of the field, such as the separation of perception and cognition. In fact, I think this book redefines the major questions of artificial intelligence (and although Mitchell does not state it, I think the copycat model does not fall prey to either the frame problem or to the symbol grounding problem).
It is very unfortunate that this is not one of the best-selling books in AI. But I believe that it will ultimately make its mark on the History of the field, if for no other reason than it simply is the right approach to genuine intelligence and authentic understanding.
Should one day Amazon.com let me give a 6-star to a book, but charge me a dollar for giving it, this is one that would definitely deserve to be such a 6-star.
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PS. I would also recommend Hofstadter's Fluid Concepts and Creative Analogies; and Robert French's Subtlety of Sameness.

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The psychologist William James observed that "a native talent forperceiving analogies is... the leading fact in genius of every order." Thecentrality and the ubiquity of analogy in creative thought have been noted again andagain by scientists, artists, and writers, and understanding and modeling analogicalthought have emerged as two of the most important challenges for cognitivescience.Analogy-Making as Perception is based on the premise that analogy-making isfundamentally a high-level perceptual process in which the interaction of perceptionand concepts gives rise to "conceptual slippages" which allow analogies to be made.It describes Copycat - a computer model of analogymaking, developed by the authorwith Douglas Hofstadter, that models the complex, subconscious interaction betweenperception and concepts that underlies the creation of analogies.In Copycat, bothconcepts and high-level perception are emergent phenomena, arising from largenumbers of low-level, parallel, non-deterministic activities. In the spectrum ofcognitive modeling approaches, Copycat occupies a unique intermediate positionbetween symbolic systems and connectionist systems a position that is at present themost useful one for understanding the fluidity of concepts and high-levelperception.On one level the work described here is about analogy-making, but onanother level it is about cognition in general. It explores such issues as thenature of concepts and perception and the emergence of highly flexible concepts froma lower-level "subcognitive" substrate.Melanie Mitchell, Assistant Professor in theDepartment of Electrical Engineering and Computer Science at the University ofMichigan, is a Fellow of the Michigan Society of Fellows. She is also Director ofthe Adaptive Computation Program at the Santa Fe Institute.

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11/10/2011

Cellular Automata Machines: A New Environment for Modeling (Scientific Computation) Review

Cellular Automata Machines: A New Environment for Modeling (Scientific Computation)
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This is a terrific book that takes a step-by-step approach to cellular automata, especially for modelling. Within the first two chapters I had already found several interesting ideas for improving my own general-purpose automata program.
The part of the book that is most dated is the discussion of a specific hardware card and software designed for IBM PCs and ATs, and a specific dialect of Forth that can be used to program automata that will run on this card. Obviously this is no longer the mainstream approach to programming automata - even massively parallel systems programming has moved away from Forth. For me, I think of it as pseudo-code instead of a program example, and the book is still very very useful.
So on the whole, I would say this is a valuable addition to the bookshelf of any automata enthusiast.

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Recently, cellular automata machines with the size, speed, andflexibility for general experimentation at a moderate cost have become available tothe scientific community. These machines provide a laboratory in which the ideaspresented in this book can be tested and applied to the synthesis of a great varietyof systems. Computer scientists and researchers interested in modeling andsimulation as well as other scientists who do mathematical modeling will find thisintroduction to cellular automata and cellular automata machines (CAM) both usefuland timely.Cellular automata are the computer scientist's counterpart to thephysicist's concept of 'field' They provide natural models for many investigationsin physics, combinatorial mathematics, and computer science that deal with systemsextended in space and evolving in time according to local laws. A cellular automatamachine is a computer optimized for the simulation of cellular automata. Itsdedicated architecture allows it to run thousands of times faster than ageneral-purpose computer of comparable cost programmed to do the same task. Inpractical terms this permits intensive interactive experimentation and opens up newfields of research in distributed dynamics, including practical applicationsinvolving parallel computation and image processing.Contents: Introduction. CellularAutomata. The CAM Environment. A Live Demo. The Rules of the Game. Our First rules.Second-order Dynamics. The Laboratory. Neighbors and Neighborhood. Running. ParticleMotion. The Margolus Neighborhood. Noisy Neighbors. Display and Analysis. PhysicalModeling. Reversibility. Computing Machinery. Hydrodynamics. Statistical Mechanics.Other Applications. Imaging Processing. Rotations. Pattern Recognition. MultipleCAMS. Perspectives and Conclusions.Tommaso Toffoli and Norman Margolus areresearchers at the Laboratory for Computer Science at MIT. Cellular AutomataMachines is included in the Scientific Computation Series, edited by DennisCannon.

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11/08/2011

Modeling Nature: Cellular Automata Simulations with Mathematica Review

Modeling Nature: Cellular Automata Simulations with Mathematica
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I have got several ideas from this book. I have never used Mathematica, but one of the most important features of the book, is the fact that is enough clear, and its code can be translated to oher languages veary easy. I recomend this book for every person interested in cellular automata applications and implementations rather that pure theory.

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This is the first volume in a suite of short, inexpensive, paperbound volumes intended for student usage as textbooks, or course supplements, and for purchase as single-copy reference works for professionals in specific disciplines, and, in some cases, for interdisciplinary use. This title focuses on cellular automata simulations while using Mathematica, thus its audience is a generally broad one, although physicists, life scientists and engineers will find this title to be of particular interest. Those familiar with Gaylord's previous book, coauthored with Paul Wellin, "Computer Simulations with Mathematica - Explorations in Complex Biological and Physical Systems", also published by TELOS, will find this new title to be an in-depth extension of some topics dealt with in that book. Modeling Nature: Cellular Automata Simulations with Mathematica, however, contains simulations not found in the Gaylord-Wellin volume. This book will have a DOS-diskette packaged with it, enabling cross-platform access to the code. These data files will also be made accessible online via the Internet at telospub.com FTP and WWW sites.

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8/24/2011

Generative Social Science: Studies in Agent-Based Computational Modeling (Princeton Studies in Complexity) Review

Generative Social Science: Studies in Agent-Based Computational Modeling (Princeton Studies in Complexity)
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Josh Epstein's new Opus is a landmark publication in the emerging field of multiagent-based simulation of dynamic social systems. Since Josh is not only one of this still nascent (though burgeoning) field's ablest and most creative practitioners, but also among its most thoughtful critics, the reader of has two treats in store: (1) a generous, and wide-ranging, sampling of case studies (including social networks and evolution, population growth, emergence of economic classes, civil unrest, timing of retirement, the dynamics of adaptive organizations and the spread of infectious disease), and (2) a cogent "meta" discussion of what multiagent models ARE, ARE NOT and how (when their properties and limitations are *not* properly taken account of) they can easily be MISAPPLIED.
Far from suggesting that multiagent-based models are a panacea solution to all (or most) social dynamical systems, Josh's book carefully articulates the conditions for which such an approach IS (and is NOT) appropriate; an approach rarely taken by other, similar, overviews of the field. Indeed, the cogent philosophical discussion in Chapter One - alone! - in which the generativist's position is defined and put into a broader modeling/simulation context, is worth the price of admission; I have not seen a better "manifesto" of multiagent-based modeling elsewhere.
Finally, without taking away any of the inherent "beauty" (in the technical sense) of the often exaggerated concept of "emergence," Josh succeeds admirably in both defining the term, and de-mystifying it, stripping it of some of its unnecessary "quasi-mystical" baggage (at least as it is often portrayed in lay publications).
Anyone who is interested in understanding how agent models may be used to help explore the dynamics of social dynamical systems, should have this book firmly on top of their "must read" list! Josh has generously provided future generations of agent explorers their go-to source of both inspiration and ideas. Well done Josh!

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Agent-based computational modeling is changing the face of social science. In Generative Social Science, Joshua Epstein argues that this powerful, novel technique permits the social sciences to meet a fundamentally new standard of explanation, in which one "grows" the phenomenon of interest in an artificial society of interacting agents: heterogeneous, boundedly rational actors, represented as mathematical or software objects. After elaborating this notion of generative explanation in a pair of overarching foundational chapters, Epstein illustrates it with examples chosen from such far-flung fields as archaeology, civil conflict, the evolution of norms, epidemiology, retirement economics, spatial games, and organizational adaptation. In elegant chapter preludes, he explains how these widely diverse modeling studies support his sweeping case for generative explanation.

This book represents a powerful consolidation of Epstein's interdisciplinary research activities in the decade since the publication of his and Robert Axtell's landmark volume, Growing Artificial Societies. Beautifully illustrated, Generative Social Science includes a CD that contains animated movies of core model runs, and programs allowing users to easily change assumptions and explore models, making it an invaluable text for courses in modeling at all levels.


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