Showing posts with label epidemiology. Show all posts
Showing posts with label epidemiology. Show all posts

6/20/2012

Mathematical Epidemiology (Lecture Notes in Mathematics / Mathematical Biosciences Subseries) Review

Mathematical Epidemiology (Lecture Notes in Mathematics / Mathematical Biosciences Subseries)
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well done an excellent tool as a reference and introduction to epidemiological modeling. clear and simple. a tool for intermediate and ADVANCE epidemioogia

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Based on lecture notes of two summer schools with a mixed audience from mathematical sciences, epidemiology and public health, this volume offers a comprehensive introduction to basic ideas and techniques in modeling infectious diseases, for the comparison of strategies to plan for an anticipated epidemic or pandemic, and to deal with a disease outbreak in real time. It covers detailed case studies for diseases including pandemic influenza, West Nile virus, and childhood diseases. Models for other diseases including Severe Acute Respiratory Syndrome, fox rabies, and sexually transmitted infections are included as applications. Its chapters are coherent and complementary independent units. In order to accustom students to look at the current literature and to experience different perspectives, no attempt has been made to achieve united writing style or unified notation.Notes on some mathematical background (calculus, matrix algebra, differential equations, and probability) have been prepared and may be downloaded at the web site of the Centre for Disease Modeling (www.cdm.yorku.ca).

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11/30/2011

Bayesian Disease Mapping: Hierarchical Modeling in Spatial Epidemiology (Chapman & Hall/CRC Interdisciplinary Statistics) Review

Bayesian Disease Mapping: Hierarchical Modeling in Spatial Epidemiology (Chapman and Hall/CRC Interdisciplinary Statistics)
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This book provides interesting elements about quantitative methods in epidemiology for master students or researchers. it is quite easy to read when you have some basic background in statistics. Nethetheless, the quality of the fonts is not the best, and there are some surprising typing errors even in early pages as the one about "list of tables". Plenty of relevant references on papers and useful softwares.

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Focusing on data commonly found in public health databases and clinical settings, Bayesian Disease Mapping: Hierarchical Modeling in Spatial Epidemiology provides an overview of the main areas of Bayesian hierarchical modeling and its application to the geographical analysis of disease. The book explores a range of topics in Bayesian inference and modeling, including Markov chain Monte Carlo methods, Gibbs sampling, the Metropolis-Hastings algorithm, goodness-of-fit measures, and residual diagnostics. It also focuses on special topics, such as cluster detection; space-time modeling; and multivariate, survival, and longitudinal analyses. The author explains how to apply these methods to disease mapping using numerous real-world data sets pertaining to cancer, asthma, epilepsy, foot and mouth disease, influenza, and other diseases. In the appendices, he shows how R and WinBUGS can be useful tools in data manipulation and simulation. Applying Bayesian methods to the modeling of georeferenced health data, Bayesian Disease Mapping proves that the application of these approaches to biostatistical problems can yield important insights into data.

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9/29/2011

Hierarchical Modeling and Analysis for Spatial Data (Chapman & Hall/CRC Monographs on Statistics & Applied Probability) Review

Hierarchical Modeling and Analysis for Spatial Data (Chapman and Hall/CRC Monographs on Statistics and Applied Probability)
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I've bought several spatial statistics books over the years and found they generally fall into one of two categories; oversimplified or cover-to-cover matrix notation, neither of which is very useful for my research. However, this book is "just right," bridging these two extremes. It briefly covers the basics of both point and areal analysis, then gives the reader the tools for more advanced (i.e., realistic) analysis. They devote a chapter to Bayesian basics, which is needed for the last 4 or 5 chapters. The last few chapters weave together a detailed discussion on a variety of hierarchical models and current published results. Most importantly this book offers quite a bit of the necessary R and Winbugs code. Although many of their examples are from the public health world, the techniques and code are easily adapted to natural resource data - my personal focus.

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Among the many uses of hierarchical modeling, their application to the statistical analysis of spatial and spatio-temporal data from areas such as epidemiology And environmental science has proven particularly fruitful. Yet to date, the few books that address the subject have been either too narrowly focused on specific aspects of spatial analysis, or written at a level often inaccessible to those lacking a strong background in mathematical statistics.Hierarchical Modeling and Analysis for Spatial Data is the first accessible, self-contained treatment of hierarchical methods, modeling, and data analysis for spatial and spatio-temporal data. Starting with overviews of the types of spatial data, the data analysis tools appropriate for each, and a brief review of the Bayesian approach to statistics, the authors discuss hierarchical modeling for univariate spatial response data, including Bayesian kriging and lattice (areal data) modeling. They then consider the problem of spatially misaligned data, methods for handling multivariate spatial responses, spatio-temporal models, and spatial survival models. The final chapter explores a variety of special topics, including spatially varying coefficient models.This book provides clear explanations, plentiful illustrations --some in full color--a variety of homework problems, and tutorials and worked examples using some of the field's most popular software packages.. Written by a team of leaders in the field, it will undoubtedly remain the primary textbook and reference on the subject for years to come.

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9/19/2011

Modeling Infectious Diseases in Humans and Animals Review

Modeling Infectious Diseases in Humans and Animals
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this is an excellent and elementary introduction for beginners, especially undergraduates. the author has introduced a large number of modellings in this field as clearly as possible. nevertheless, the mathematical analysis, the ordinary differential equation and even nonlinear dynamics should be mastered before reading this book.

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For epidemiologists, evolutionary biologists, and health-care professionals, real-time and predictive modeling of infectious disease is of growing importance. This book provides a timely and comprehensive introduction to the modeling of infectious diseases in humans and animals, focusing on recent developments as well as more traditional approaches.

Matt Keeling and Pejman Rohani move from modeling with simple differential equations to more recent, complex models, where spatial structure, seasonal "forcing," or stochasticity influence the dynamics, and where computer simulation needs to be used to generate theory. In each of the eight chapters, they deal with a specific modeling approach or set of techniques designed to capture a particular biological factor. They illustrate the methodology used with examples from recent research literature on human and infectious disease modeling, showing how such techniques can be used in practice. Diseases considered include BSE, foot-and-mouth, HIV, measles, rubella, smallpox, and West Nile virus, among others. Particular attention is given throughout the book to the development of practical models, useful both as predictive tools and as a means to understand fundamental epidemiological processes. To emphasize this approach, the last chapter is dedicated to modeling and understanding the control of diseases through vaccination, quarantine, or culling.

Comprehensive, practical introduction to infectious disease modeling
Builds from simple to complex predictive models
Models and methodology fully supported by examples drawn from research literature
Practical models aid students' understanding of fundamental epidemiological processes
For many of the models presented, the authors provide accompanying programs written in Java, C, Fortran, and MATLAB
In-depth treatment of role of modeling in understanding disease control


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9/18/2011

Statistical Modeling for Biomedical Researchers: A Simple Introduction to the Analysis of Complex Data (Cambridge Medicine) Review

Statistical Modeling for Biomedical Researchers: A Simple Introduction to the Analysis of Complex Data (Cambridge Medicine)
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I used this book as the text for a biostatistics class that used STATA as the statistitical package. I found the organization, problems, and the STATA output the book provides, all very helpful. In addition, as I moved systematically through the book, the tips regarding using the STATA features were key to my learning many of the practical aspects of the STATA program.

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For biomedical researchers, the new edition of this standard text guides readers in the selection and use of advanced statistical methods and the presentation of results to clinical colleagues. It assumes no knowledge of mathematics beyond high school level and is accessible to anyone with an introductory background in statistics. The Stata statistical software package is used to perform the analyses, in this edition employing the intuitive version 10. Topics covered include linear, logistic and Poisson regression, survival analysis, fixed-effects analysis of variance, and repeated-measure analysis of variance. Restricted cubic splines are used to model non-linear relationships. Each method is introduced in its simplest form and then extended to cover more complex situations. An appendix will help the reader select the most appropriate statistical methods for their data. The text makes extensive use of real data sets available online through Vanderbilt University.

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8/21/2011

A Biologist's Guide to Mathematical Modeling in Ecology and Evolution Review

A Biologist's Guide to Mathematical Modeling in Ecology and Evolution
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Although other books may have a better presentation of the models' use and context, this is the best presentation I have seen on stability analysis, plus it presents a good quantity of model examples. The presentation of the math used is ample and clear. I highly reccomend it.

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Thirty years ago, biologists could get by with a rudimentary grasp of mathematics and modeling. Not so today. In seeking to answer fundamental questions about how biological systems function and change over time, the modern biologist is as likely to rely on sophisticated mathematical and computer-based models as traditional fieldwork. In this book, Sarah Otto and Troy Day provide biology students with the tools necessary to both interpret models and to build their own.

The book starts at an elementary level of mathematical modeling, assuming that the reader has had high school mathematics and first-year calculus. Otto and Day then gradually build in depth and complexity, from classic models in ecology and evolution to more intricate class-structured and probabilistic models. The authors provide primers with instructive exercises to introduce readers to the more advanced subjects of linear algebra and probability theory. Through examples, they describe how models have been used to understand such topics as the spread of HIV, chaos, the age structure of a country, speciation, and extinction.

Ecologists and evolutionary biologists today need enough mathematical training to be able to assess the power and limits of biological models and to develop theories and models themselves. This innovative book will be an indispensable guide to the world of mathematical models for the next generation of biologists.

A how-to guide for developing new mathematical models in biology
Provides step-by-step recipes for constructing and analyzing models
Interesting biological applications
Explores classical models in ecology and evolution
Questions at the end of every chapter
Primers cover important mathematical topics
Exercises with answers
Appendixes summarize useful rules
Labs and advanced material available


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